WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199091 Gene Name  F32G8.10
Sequence Name  ? F32G8.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Is affected by iron oxide nanoparticle based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 132
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199091

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F32G8.10 F32G8.10 132   V: 10564424-10564555
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk963301
gk964451
gk964452
gk963495
gk963496
gk964351
gk964304
gk648311

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199091 10564424 10564555 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_10563539..10564423   885 V: 10563539-10564423 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Most down-regulated genes after Cit-SPIONs exposure (p<0.01). Past 3.03 was used for all statistical analyses. Statistical significance between two groups was assessed by t tests. A gene is determined to be differentially expressed when p < 0.01 and only 75 genes were selected as differentially regulated for each expression cluster. WBPaper00051437:Cit-SPIONs_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199091 10564424 10564555 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
132

1 Sequence Ontology Term