WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T21C9.2a Sequence Name  T21C9.2a
Length (nt)  3177   Chromosome Location  V: 10566655-10566757
Chromosome . Primary Identifier  V Chromosome Location . Start  10566655
Chromosome Location . End  10566757
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21C9.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE31365 VPS-54, isoform a 119.2 1058 Caenorhabditis elegans
 

Other

11 RNAi

WormBase ID
WBRNAi00053718
WBRNAi00018966
WBRNAi00076693
WBRNAi00035752
WBRNAi00061891
WBRNAi00000295
WBRNAi00023609
WBRNAi00023835
WBRNAi00024123
WBRNAi00065616
WBRNAi00099102

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T21C9.2a 10566655 10566757 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006934 vps-54 T21C9.2 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:T21C9.2a 10566655 10566757 -1
CDS:T21C9.2a 10566804 10567209 -1
CDS:T21C9.2a 10567254 10567447 -1
CDS:T21C9.2a 10567501 10569095 -1
CDS:T21C9.2a 10569143 10569295 -1
CDS:T21C9.2a 10571019 10571123 -1
CDS:T21C9.2a 10571174 10571354 -1
CDS:T21C9.2a 10575445 10575684 -1
CDS:T21C9.2a 10576207 10576406 -1

1 Sequence

Length
3177

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T21C9.2a.1 T21C9.2a.1 3443   V: 10566402-10576419