WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28H7.10a.1 Sequence Name  F28H7.10a.1
Length (nt)  2689   Chromosome Location  V: 10764366-10768590
Chromosome . Primary Identifier  V Chromosome Location . Start  10764366
Chromosome Location . End  10768590 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28H7.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003838 ocr-1 F28H7.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28H7.10a F28H7.10a 2553   V: 10764366-10764502

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28H7.10a.1 10764366 10768590 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon196542   137   V: 10764366-10764502 Caenorhabditis elegans
Exon196543   130   V: 10764548-10764677 Caenorhabditis elegans
Exon196544   118   V: 10764867-10764984 Caenorhabditis elegans
Exon196545   84   V: 10765321-10765404 Caenorhabditis elegans
Exon196546   132   V: 10765599-10765730 Caenorhabditis elegans
Exon196547   190   V: 10765781-10765970 Caenorhabditis elegans
Exon196548   256   V: 10766073-10766328 Caenorhabditis elegans
Exon196549   153   V: 10766381-10766533 Caenorhabditis elegans
Exon196551   171   V: 10766577-10766747 Caenorhabditis elegans
Exon196552   243   V: 10766935-10767177 Caenorhabditis elegans
Exon196553   167   V: 10767225-10767391 Caenorhabditis elegans
Exon196554   110   V: 10767437-10767546 Caenorhabditis elegans
Exon196555   548   V: 10767700-10768247 Caenorhabditis elegans
Exon196556   250   V: 10768341-10768590 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28H7.10a.1 10764366 10768590 1

1 Sequence

Length
2689

1 Sequence Ontology Term

Identifier Name Description
transcript