WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201739 Gene Name  F58B4.11
Sequence Name  ? F58B4.11 Organism  Caenorhabditis elegans
Automated Description  Enriched in AVK based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 186
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201739

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F58B4.11 F58B4.11 186   V: 10915943-10916128
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk963301
gk964451
gk964452
gk649948
gk934824
gk502949
WBVar02024287
tm10333
WBVar01743234

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201739 10915943 10916128 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_10916129..10917049   921 V: 10916129-10917049 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage. edgeR, FDR < 0.001, fold change > 2. WBPaper00055565:AVK_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201739 10915943 10916128 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
186

1 Sequence Ontology Term