WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53B7.2a.1 Sequence Name  F53B7.2a.1
Length (nt)  1754   Chromosome Location  V: 10992098-10994971
Chromosome . Primary Identifier  V Chromosome Location . Start  10992098
Chromosome Location . End  10994971 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53B7.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009965 frpr-9 F53B7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53B7.2a F53B7.2a 1599   V: 10992099-10992198

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53B7.2a.1 10992098 10994971 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon197346   101   V: 10992098-10992198 Caenorhabditis elegans
Exon197347   101   V: 10992247-10992347 Caenorhabditis elegans
Exon197349   265   V: 10992400-10992664 Caenorhabditis elegans
Exon197351   283   V: 10992706-10992988 Caenorhabditis elegans
Exon197353   27   V: 10993186-10993212 Caenorhabditis elegans
Exon197354   81   V: 10993355-10993435 Caenorhabditis elegans
Exon197356   205   V: 10993600-10993804 Caenorhabditis elegans
Exon197358   192   V: 10993895-10994086 Caenorhabditis elegans
Exon197360   79   V: 10994131-10994209 Caenorhabditis elegans
Exon197362   207   V: 10994258-10994464 Caenorhabditis elegans
Exon197364   213   V: 10994759-10994971 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53B7.2a.1 10992098 10994971 1

1 Sequence

Length
1754

1 Sequence Ontology Term

Identifier Name Description
transcript