WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42A5A.1.1 Sequence Name  Y42A5A.1.1
Length (nt)  3708   Chromosome Location  V: 11087948-11097985
Chromosome . Primary Identifier  V Chromosome Location . Start  11087948
Chromosome Location . End  11097985 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42A5A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012776 Y42A5A.1 Y42A5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42A5A.1 Y42A5A.1 3138   V: 11088154-11088190

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y42A5A.1.1 11087948 11097985 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon197566   243   V: 11087948-11088190 Caenorhabditis elegans
Exon197568   484   V: 11089127-11089610 Caenorhabditis elegans
Exon197569   163   V: 11089659-11089821 Caenorhabditis elegans
Exon197570   158   V: 11089865-11090022 Caenorhabditis elegans
Exon197571   159   V: 11090517-11090675 Caenorhabditis elegans
Exon197572   112   V: 11090722-11090833 Caenorhabditis elegans
Exon197573   121   V: 11090884-11091004 Caenorhabditis elegans
Exon197594   48   V: 11093939-11093986 Caenorhabditis elegans
Exon197595   224   V: 11094034-11094257 Caenorhabditis elegans
Exon197596   269   V: 11094469-11094737 Caenorhabditis elegans
Exon197597   154   V: 11094830-11094983 Caenorhabditis elegans
Exon197598   342   V: 11095030-11095371 Caenorhabditis elegans
Exon197602   90   V: 11096242-11096331 Caenorhabditis elegans
Exon197603   89   V: 11096381-11096469 Caenorhabditis elegans
Exon197604   141   V: 11096516-11096656 Caenorhabditis elegans
Exon197605   168   V: 11096705-11096872 Caenorhabditis elegans
Exon197606   135   V: 11096926-11097060 Caenorhabditis elegans
Exon197607   82   V: 11097115-11097196 Caenorhabditis elegans
Exon197608   526   V: 11097460-11097985 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y42A5A.1.1 11087948 11097985 1

1 Sequence

Length
3708

1 Sequence Ontology Term

Identifier Name Description
transcript