WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42A5A.2a.1 Sequence Name  Y42A5A.2a.1
Length (nt)  1966   Chromosome Location  V: 11091016-11093607
Chromosome . Primary Identifier  V Chromosome Location . Start  11091016
Chromosome Location . End  11093607 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42A5A.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012777 lact-8 Y42A5A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42A5A.2a Y42A5A.2a 1845   V: 11091091-11091471

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42A5A.2a.1 11091016 11093607 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon197574   456   V: 11091016-11091471 Caenorhabditis elegans
Exon197577   573   V: 11091515-11092087 Caenorhabditis elegans
Exon197580   139   V: 11092135-11092273 Caenorhabditis elegans
Exon197583   155   V: 11092329-11092483 Caenorhabditis elegans
Exon197587   124   V: 11092529-11092652 Caenorhabditis elegans
Exon197589   168   V: 11092869-11093036 Caenorhabditis elegans
Exon197592   351   V: 11093257-11093607 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42A5A.2a.1 11091016 11093607 -1

1 Sequence

Length
1966

1 Sequence Ontology Term

Identifier Name Description
transcript