WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42A5A.4b.1 Sequence Name  Y42A5A.4b.1
Length (nt)  1600   Chromosome Location  V: 11098899-11107339
Chromosome . Primary Identifier  V Chromosome Location . Start  11098899
Chromosome Location . End  11107339 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42A5A.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012779 cdkl-1 Y42A5A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42A5A.4b Y42A5A.4b 1455   V: 11098981-11099085

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42A5A.4b.1 11098899 11107339 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon197609   187   V: 11098899-11099085 Caenorhabditis elegans
Exon197611   191   V: 11099308-11099498 Caenorhabditis elegans
Exon197612   72   V: 11103035-11103106 Caenorhabditis elegans
Exon197614   193   V: 11105474-11105666 Caenorhabditis elegans
Exon197618   122   V: 11106083-11106204 Caenorhabditis elegans
Exon197621   164   V: 11106247-11106410 Caenorhabditis elegans
Exon197624   198   V: 11106533-11106730 Caenorhabditis elegans
Exon197627   140   V: 11106780-11106919 Caenorhabditis elegans
Exon197630   129   V: 11106961-11107089 Caenorhabditis elegans
Exon197633   204   V: 11107136-11107339 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42A5A.4b.1 11098899 11107339 1

1 Sequence

Length
1600

1 Sequence Ontology Term

Identifier Name Description
transcript