WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195252 Gene Name  K10D6.6
Sequence Name  ? K10D6.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including glh-4; glh-1; and pgl-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 3492
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195252

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K10D6.6 K10D6.6 1711   V: 11204492-11207983
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00016967

54 Allele

Public Name
gk963271
gk963301
gk964451
gk964452
gk817635
gk786235
gk526461
gk390595
gk786236
gk697763
gk798786
gk747620
gk865008
gk502295
gk882105
gk647288
gk804925
gk900682
gk717086
gk686836
gk896258
gk480664
gk523017
gk832350
gk655035
gk385177
gk373348
gk776615
WBVar02060984
WBVar02060985

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00195252 11204492 11207983 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage. DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00195252 11204492 11207983 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
3492

1 Sequence Ontology Term