WormMine: Gene WBGene00005235

• WormBase Gene ID: WBGene00005235
• Gene Name: srh-9
• Sequence Name: T11F9.17
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in ASHL and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including etr-1; dpy-21; and hlh-26 based on RNA-seq and microarray studies. Is affected by Doxorubicin based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: V :3.15939 ±0.001926
• Length (nt): 831

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005235

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

16 Allele

• gk963271
• gk963301
• gk964458
• gk964459
• gk964451
• gk964452
• gk963618
• gk362895
• gk686840
• gk424676
• gk454516
• gk843593
• gk491115
• WBVar01865874
• gk247531
• WBVar00004585

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005235
• Start: 11478413
• End: 11479243
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_11478292..11478412
• Length (nt): 121
• Chromosome Location: V: 11478292-11478412
• Organism: Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_upregulated
	Transcripts enriched in germline by comparing dissected germline tissue with dissected intestine tissue, both injected with empty RNAi vector.	Genes were determined germline-enriched if the lowest expression value (log2(FPKM+1)) observed in the germline empty vector samples was at least 2-fold higher than the highest expression value observed in the intestine empty vector samples.	WBPaper00051039:germline_enriched
	Transcripts that showed significantly increased expression in hlh-26(ok1453) animals exposed to E. faecium for 8 hours, comparing to N2 animals exposed to E. faecium for 8 hours.	Fold change > 2.	WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
	Transcripts that showed significantly decreased expression in tetraploid N2 animals after exposure to 5 uM doxorubicin for 72 hours at 15C from L1 to L4 larve stage.	DESeq2 R package (1.20.0), fold change > 2, and FDR < 0.05.	WBPaper00066110:Doxorubicin_downregulated_tetraploid
	Transcripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage.	DESeq v1.6.3. Fold change > 1.5.	WBPaper00050370:dpy-21(e428)_L3_downregulated
	Transcripts depleted at neuron synapses (enriched at the somatic fragments) by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.	DESeq2, FDR < 0.05	WBPaper00059027:neuron-synapses_depleted
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA
	Single-cell RNA-Seq cell group 47_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:47_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005235
• Start: 11478413
• End: 11479243
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 831

1 Sequence Ontology Term