WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38B7.1a.1 Sequence Name  F38B7.1a.1
Length (nt)  2496   Chromosome Location  V: 11527831-11541219
Chromosome . Primary Identifier  V Chromosome Location . Start  11527831
Chromosome Location . End  11541219 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38B7.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009532 ccch-1 F38B7.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38B7.1a F38B7.1a 1383   V: 11527957-11528045

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38B7.1a.1 11527831 11541219 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon198833   67   V: 11527831-11527897 Caenorhabditis elegans
Exon198834   100   V: 11527946-11528045 Caenorhabditis elegans
Exon198835   70   V: 11528131-11528200 Caenorhabditis elegans
Exon198841   206   V: 11536056-11536261 Caenorhabditis elegans
Exon198843   104   V: 11536593-11536696 Caenorhabditis elegans
Exon198846   316   V: 11538932-11539247 Caenorhabditis elegans
Exon198848   287   V: 11539345-11539631 Caenorhabditis elegans
Exon198850   115   V: 11539735-11539849 Caenorhabditis elegans
Exon198852   80   V: 11539902-11539981 Caenorhabditis elegans
Exon198854   1151   V: 11540069-11541219 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38B7.1a.1 11527831 11541219 1

1 Sequence

Length
2496

1 Sequence Ontology Term

Identifier Name Description
transcript