WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C55A6.9 Sequence Name  C55A6.9
Length (nt)  1278   Chromosome Location  V: 11521766-11521806
Chromosome . Primary Identifier  V Chromosome Location . Start  11521766
Chromosome Location . End  11521806
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C55A6.9

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE20614 PAFO-1 49.9 425 Caenorhabditis elegans
 

Other

15 RNAi

WormBase ID
WBRNAi00024908
WBRNAi00008556
WBRNAi00043217
WBRNAi00030176
WBRNAi00094003
WBRNAi00094223
WBRNAi00110702
WBRNAi00071569
WBRNAi00110703
WBRNAi00111919
WBRNAi00064417
WBRNAi00117708
WBRNAi00117710
WBRNAi00117709
WBRNAi00110701

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C55A6.9 11521766 11521806 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008338 pafo-1 C55A6.9 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:C55A6.9 11521766 11521806 1
CDS:C55A6.9 11521858 11521959 1
CDS:C55A6.9 11522009 11522135 1
CDS:C55A6.9 11522190 11522450 1
CDS:C55A6.9 11522503 11523112 1
CDS:C55A6.9 11523169 11523305 1

1 Sequence

Length
1278

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C55A6.9.1 C55A6.9.1 1420   V: 11521703-11523384