WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38B7.5.1 Sequence Name  F38B7.5.1
Length (nt)  2830   Chromosome Location  V: 11554630-11558127
Chromosome . Primary Identifier  V Chromosome Location . Start  11554630
Chromosome Location . End  11558127 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38B7.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001110 duo-1 F38B7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38B7.5 F38B7.5 2634   V: 11554637-11554863

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38B7.5.1 11554630 11558127 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon198884   234   V: 11554630-11554863 Caenorhabditis elegans
Exon198885   92   V: 11554918-11555009 Caenorhabditis elegans
Exon198886   280   V: 11555054-11555333 Caenorhabditis elegans
Exon198887   210   V: 11555530-11555739 Caenorhabditis elegans
Exon198888   262   V: 11555791-11556052 Caenorhabditis elegans
Exon198889   278   V: 11556101-11556378 Caenorhabditis elegans
Exon198890   123   V: 11556507-11556629 Caenorhabditis elegans
Exon198891   417   V: 11556681-11557097 Caenorhabditis elegans
Exon198892   526   V: 11557149-11557674 Caenorhabditis elegans
Exon198893   408   V: 11557720-11558127 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38B7.5.1 11554630 11558127 1

1 Sequence

Length
2830

1 Sequence Ontology Term

Identifier Name Description
transcript