WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H12C20.2.2 Sequence Name  H12C20.2.2
Length (nt)  3203   Chromosome Location  V: 11566801-11570601
Chromosome . Primary Identifier  V Chromosome Location . Start  11566801
Chromosome Location . End  11570601 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H12C20.2.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004064 pms-2 H12C20.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H12C20.2 H12C20.2 2418   V: 11566889-11566957

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H12C20.2.2 11566801 11570601 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon198921   157   V: 11566801-11566957 Caenorhabditis elegans
Exon198924   179   V: 11567007-11567185 Caenorhabditis elegans
Exon198926   167   V: 11567233-11567399 Caenorhabditis elegans
Exon198928   168   V: 11567448-11567615 Caenorhabditis elegans
Exon198930   176   V: 11567661-11567836 Caenorhabditis elegans
Exon198932   481   V: 11567897-11568377 Caenorhabditis elegans
Exon198934   193   V: 11568425-11568617 Caenorhabditis elegans
Exon198936   85   V: 11568667-11568751 Caenorhabditis elegans
Exon198938   100   V: 11568800-11568899 Caenorhabditis elegans
Exon198940   474   V: 11568951-11569424 Caenorhabditis elegans
Exon198942   263   V: 11569467-11569729 Caenorhabditis elegans
Exon198944   224   V: 11569783-11570006 Caenorhabditis elegans
Exon198945   536   V: 11570066-11570601 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H12C20.2.2 11566801 11570601 -1

1 Sequence

Length
3203

1 Sequence Ontology Term

Identifier Name Description
transcript