WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H12C20.2.1 Sequence Name  H12C20.2.1
Length (nt)  2561   Chromosome Location  V: 11566804-11569903
Chromosome . Primary Identifier  V Chromosome Location . Start  11566804
Chromosome Location . End  11569903 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H12C20.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004064 pms-2 H12C20.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H12C20.2 H12C20.2 2418   V: 11566889-11566957

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H12C20.2.1 11566804 11569903 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon198922   154   V: 11566804-11566957 Caenorhabditis elegans
Exon198923   179   V: 11567007-11567185 Caenorhabditis elegans
Exon198925   167   V: 11567233-11567399 Caenorhabditis elegans
Exon198927   168   V: 11567448-11567615 Caenorhabditis elegans
Exon198929   176   V: 11567661-11567836 Caenorhabditis elegans
Exon198931   481   V: 11567897-11568377 Caenorhabditis elegans
Exon198933   193   V: 11568425-11568617 Caenorhabditis elegans
Exon198935   85   V: 11568667-11568751 Caenorhabditis elegans
Exon198937   100   V: 11568800-11568899 Caenorhabditis elegans
Exon198939   474   V: 11568951-11569424 Caenorhabditis elegans
Exon198941   263   V: 11569467-11569729 Caenorhabditis elegans
Exon198943   121   V: 11569783-11569903 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H12C20.2.1 11566804 11569903 -1

1 Sequence

Length
2561

1 Sequence Ontology Term

Identifier Name Description
transcript