WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F2.2j.1 Sequence Name  T27F2.2j.1
Length (nt)  3346   Chromosome Location  V: 11631424-11637206
Chromosome . Primary Identifier  V Chromosome Location . Start  11631424
Chromosome Location . End  11637206 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2j T27F2.2j 2898   V: 11631872-11631940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2j.1 11631424 11637206 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199106   517   V: 11631424-11631940 Caenorhabditis elegans
Exon199128   141   V: 11632132-11632272 Caenorhabditis elegans
Exon199141   148   V: 11632320-11632467 Caenorhabditis elegans
Exon199147   45   V: 11632527-11632571 Caenorhabditis elegans
Exon199165   462   V: 11632712-11633173 Caenorhabditis elegans
Exon199178   241   V: 11633252-11633492 Caenorhabditis elegans
Exon199191   138   V: 11633542-11633679 Caenorhabditis elegans
Exon199204   468   V: 11633738-11634205 Caenorhabditis elegans
Exon199217   265   V: 11634253-11634517 Caenorhabditis elegans
Exon199230   122   V: 11634565-11634686 Caenorhabditis elegans
Exon199243   576   V: 11634797-11635372 Caenorhabditis elegans
Exon199248   223   V: 11636984-11637206 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2j.1 11631424 11637206 -1

1 Sequence

Length
3346

1 Sequence Ontology Term

Identifier Name Description
transcript