WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F2.2c.1 Sequence Name  T27F2.2c.1
Length (nt)  3419   Chromosome Location  V: 11631430-11637291
Chromosome . Primary Identifier  V Chromosome Location . Start  11631430
Chromosome Location . End  11637291 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2c T27F2.2c 2892   V: 11631872-11631940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2c.1 11631430 11637291 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199108   511   V: 11631430-11631940 Caenorhabditis elegans
Exon199121   141   V: 11632132-11632272 Caenorhabditis elegans
Exon199134   142   V: 11632320-11632461 Caenorhabditis elegans
Exon199145   45   V: 11632527-11632571 Caenorhabditis elegans
Exon199158   462   V: 11632712-11633173 Caenorhabditis elegans
Exon199171   241   V: 11633252-11633492 Caenorhabditis elegans
Exon199184   138   V: 11633542-11633679 Caenorhabditis elegans
Exon199197   468   V: 11633738-11634205 Caenorhabditis elegans
Exon199210   265   V: 11634253-11634517 Caenorhabditis elegans
Exon199223   122   V: 11634565-11634686 Caenorhabditis elegans
Exon199236   576   V: 11634797-11635372 Caenorhabditis elegans
Exon199250   308   V: 11636984-11637291 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2c.1 11631430 11637291 -1

1 Sequence

Length
3419

1 Sequence Ontology Term

Identifier Name Description
transcript