WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F2.2f.1 Sequence Name  T27F2.2f.1
Length (nt)  3503   Chromosome Location  V: 11631437-11637289
Chromosome . Primary Identifier  V Chromosome Location . Start  11631437
Chromosome Location . End  11637289 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2f T27F2.2f 2985   V: 11631872-11631940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2f.1 11631437 11637289 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199112   504   V: 11631437-11631940 Caenorhabditis elegans
Exon199124   141   V: 11632132-11632272 Caenorhabditis elegans
Exon199136   142   V: 11632320-11632461 Caenorhabditis elegans
Exon199149   138   V: 11632527-11632664 Caenorhabditis elegans
Exon199161   462   V: 11632712-11633173 Caenorhabditis elegans
Exon199174   241   V: 11633252-11633492 Caenorhabditis elegans
Exon199187   138   V: 11633542-11633679 Caenorhabditis elegans
Exon199200   468   V: 11633738-11634205 Caenorhabditis elegans
Exon199213   265   V: 11634253-11634517 Caenorhabditis elegans
Exon199226   122   V: 11634565-11634686 Caenorhabditis elegans
Exon199239   576   V: 11634797-11635372 Caenorhabditis elegans
Exon199249   306   V: 11636984-11637289 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2f.1 11631437 11637289 -1

1 Sequence

Length
3503

1 Sequence Ontology Term

Identifier Name Description
transcript