WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F2.2m.1 Sequence Name  T27F2.2m.1
Length (nt)  3485   Chromosome Location  V: 11631425-11637280
Chromosome . Primary Identifier  V Chromosome Location . Start  11631425
Chromosome Location . End  11637280 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2m.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2m T27F2.2m 2964   V: 11631872-11631940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2m.1 11631425 11637280 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199162   516   V: 11631425-11631940 Caenorhabditis elegans
Exon199186   141   V: 11632132-11632272 Caenorhabditis elegans
Exon199199   148   V: 11632320-11632467 Caenorhabditis elegans
Exon199207   138   V: 11632527-11632664 Caenorhabditis elegans
Exon199223   462   V: 11632712-11633173 Caenorhabditis elegans
Exon199236   241   V: 11633252-11633492 Caenorhabditis elegans
Exon199249   138   V: 11633542-11633679 Caenorhabditis elegans
Exon199262   468   V: 11633738-11634205 Caenorhabditis elegans
Exon199275   265   V: 11634253-11634517 Caenorhabditis elegans
Exon199288   122   V: 11634565-11634686 Caenorhabditis elegans
Exon199301   576   V: 11634797-11635372 Caenorhabditis elegans
Exon199312   270   V: 11637011-11637280 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2m.1 11631425 11637280 -1

1 Sequence

Length
3485

1 Sequence Ontology Term

Identifier Name Description
transcript