WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F2.2f.1 Sequence Name  T27F2.2f.1
Length (nt)  3503   Chromosome Location  V: 11631437-11637289
Chromosome . Primary Identifier  V Chromosome Location . Start  11631437
Chromosome Location . End  11637289 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2f T27F2.2f 2985   V: 11631872-11631940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2f.1 11631437 11637289 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199167   504   V: 11631437-11631940 Caenorhabditis elegans
Exon199179   141   V: 11632132-11632272 Caenorhabditis elegans
Exon199191   142   V: 11632320-11632461 Caenorhabditis elegans
Exon199204   138   V: 11632527-11632664 Caenorhabditis elegans
Exon199216   462   V: 11632712-11633173 Caenorhabditis elegans
Exon199229   241   V: 11633252-11633492 Caenorhabditis elegans
Exon199242   138   V: 11633542-11633679 Caenorhabditis elegans
Exon199255   468   V: 11633738-11634205 Caenorhabditis elegans
Exon199268   265   V: 11634253-11634517 Caenorhabditis elegans
Exon199281   122   V: 11634565-11634686 Caenorhabditis elegans
Exon199294   576   V: 11634797-11635372 Caenorhabditis elegans
Exon199304   306   V: 11636984-11637289 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2f.1 11631437 11637289 -1

1 Sequence

Length
3503

1 Sequence Ontology Term

Identifier Name Description
transcript