WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F2.2h.1 Sequence Name  T27F2.2h.1
Length (nt)  3478   Chromosome Location  V: 11631437-11637291
Chromosome . Primary Identifier  V Chromosome Location . Start  11631437
Chromosome Location . End  11637291 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2h T27F2.2h 2958   V: 11631872-11631940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2h.1 11631437 11637291 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199168   504   V: 11631437-11631940 Caenorhabditis elegans
Exon199181   141   V: 11632132-11632272 Caenorhabditis elegans
Exon199193   142   V: 11632320-11632461 Caenorhabditis elegans
Exon199205   138   V: 11632527-11632664 Caenorhabditis elegans
Exon199218   462   V: 11632712-11633173 Caenorhabditis elegans
Exon199231   241   V: 11633252-11633492 Caenorhabditis elegans
Exon199244   138   V: 11633542-11633679 Caenorhabditis elegans
Exon199257   468   V: 11633738-11634205 Caenorhabditis elegans
Exon199270   265   V: 11634253-11634517 Caenorhabditis elegans
Exon199283   122   V: 11634565-11634686 Caenorhabditis elegans
Exon199296   576   V: 11634797-11635372 Caenorhabditis elegans
Exon199314   281   V: 11637011-11637291 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2h.1 11631437 11637291 -1

1 Sequence

Length
3478

1 Sequence Ontology Term

Identifier Name Description
transcript