WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04F3.1a.1 Sequence Name  T04F3.1a.1
Length (nt)  10634   Chromosome Location  V: 11740065-11754111
Chromosome . Primary Identifier  V Chromosome Location . Start  11740065
Chromosome Location . End  11754111 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04F3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011436 T04F3.1 T04F3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04F3.1a T04F3.1a 10383   V: 11740230-11740388

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T04F3.1a.1 11740065 11754111 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199487   324   V: 11740065-11740388 Caenorhabditis elegans
Exon199488   99   V: 11740850-11740948 Caenorhabditis elegans
Exon199491   270   V: 11741835-11742104 Caenorhabditis elegans
Exon199493   290   V: 11742149-11742438 Caenorhabditis elegans
Exon199495   1012   V: 11742636-11743647 Caenorhabditis elegans
Exon199497   300   V: 11743870-11744169 Caenorhabditis elegans
Exon199499   5823   V: 11744538-11750360 Caenorhabditis elegans
Exon199501   124   V: 11750459-11750582 Caenorhabditis elegans
Exon199503   388   V: 11750642-11751029 Caenorhabditis elegans
Exon199505   167   V: 11751100-11751266 Caenorhabditis elegans
Exon199507   347   V: 11751312-11751658 Caenorhabditis elegans
Exon199509   130   V: 11751707-11751836 Caenorhabditis elegans
Exon199511   375   V: 11752187-11752561 Caenorhabditis elegans
Exon199513   86   V: 11752608-11752693 Caenorhabditis elegans
Exon199515   454   V: 11752834-11753287 Caenorhabditis elegans
Exon199517   140   V: 11753369-11753508 Caenorhabditis elegans
Exon199520   305   V: 11753807-11754111 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T04F3.1a.1 11740065 11754111 1

1 Sequence

Length
10634

1 Sequence Ontology Term

Identifier Name Description
transcript