WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04F3.1a.1 Sequence Name  T04F3.1a.1
Length (nt)  10634   Chromosome Location  V: 11740065-11754111
Chromosome . Primary Identifier  V Chromosome Location . Start  11740065
Chromosome Location . End  11754111 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04F3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011436 T04F3.1 T04F3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04F3.1a T04F3.1a 10383   V: 11740230-11740388

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T04F3.1a.1 11740065 11754111 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199542   324   V: 11740065-11740388 Caenorhabditis elegans
Exon199543   99   V: 11740850-11740948 Caenorhabditis elegans
Exon199546   270   V: 11741835-11742104 Caenorhabditis elegans
Exon199548   290   V: 11742149-11742438 Caenorhabditis elegans
Exon199550   1012   V: 11742636-11743647 Caenorhabditis elegans
Exon199552   300   V: 11743870-11744169 Caenorhabditis elegans
Exon199554   5823   V: 11744538-11750360 Caenorhabditis elegans
Exon199556   124   V: 11750459-11750582 Caenorhabditis elegans
Exon199558   388   V: 11750642-11751029 Caenorhabditis elegans
Exon199560   167   V: 11751100-11751266 Caenorhabditis elegans
Exon199562   347   V: 11751312-11751658 Caenorhabditis elegans
Exon199564   130   V: 11751707-11751836 Caenorhabditis elegans
Exon199566   375   V: 11752187-11752561 Caenorhabditis elegans
Exon199568   86   V: 11752608-11752693 Caenorhabditis elegans
Exon199570   454   V: 11752834-11753287 Caenorhabditis elegans
Exon199572   140   V: 11753369-11753508 Caenorhabditis elegans
Exon199575   305   V: 11753807-11754111 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T04F3.1a.1 11740065 11754111 1

1 Sequence

Length
10634

1 Sequence Ontology Term

Identifier Name Description
transcript