WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R31.1d.1 Sequence Name  R31.1d.1
Length (nt)  12570   Chromosome Location  V: 11901108-11916607
Chromosome . Primary Identifier  V Chromosome Location . Start  11901108
Chromosome Location . End  11916607 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R31.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004855 sma-1 R31.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R31.1d R31.1d 11862   V: 11901350-11901370

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R31.1d.1 11901108 11916607 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199988   263   V: 11901108-11901370 Caenorhabditis elegans
Exon199992   180   V: 11901996-11902175 Caenorhabditis elegans
Exon199996   285   V: 11902785-11903069 Caenorhabditis elegans
Exon200003   384   V: 11903115-11903498 Caenorhabditis elegans
Exon200009   1499   V: 11903545-11905043 Caenorhabditis elegans
Exon200015   2158   V: 11905092-11907249 Caenorhabditis elegans
Exon200021   1556   V: 11907299-11908854 Caenorhabditis elegans
Exon200027   1089   V: 11908906-11909994 Caenorhabditis elegans
Exon200033   159   V: 11910199-11910357 Caenorhabditis elegans
Exon200039   1627   V: 11910406-11912032 Caenorhabditis elegans
Exon200045   1912   V: 11912081-11913992 Caenorhabditis elegans
Exon200051   516   V: 11914065-11914580 Caenorhabditis elegans
Exon200057   147   V: 11914737-11914883 Caenorhabditis elegans
Exon200066   59   V: 11915717-11915775 Caenorhabditis elegans
Exon200072   217   V: 11915824-11916040 Caenorhabditis elegans
Exon200079   519   V: 11916089-11916607 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R31.1d.1 11901108 11916607 1

1 Sequence

Length
12570

1 Sequence Ontology Term

Identifier Name Description
transcript