WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R31.1b.1 Sequence Name  R31.1b.1
Length (nt)  12192   Chromosome Location  V: 11901350-11916141
Chromosome . Primary Identifier  V Chromosome Location . Start  11901350
Chromosome Location . End  11916141 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R31.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004855 sma-1 R31.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R31.1b R31.1b 12192   V: 11901350-11901370

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R31.1b.1 11901350 11916141 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199989   21   V: 11901350-11901370 Caenorhabditis elegans
Exon199991   180   V: 11901996-11902175 Caenorhabditis elegans
Exon199995   285   V: 11902785-11903069 Caenorhabditis elegans
Exon200001   384   V: 11903115-11903498 Caenorhabditis elegans
Exon200007   1499   V: 11903545-11905043 Caenorhabditis elegans
Exon200013   2158   V: 11905092-11907249 Caenorhabditis elegans
Exon200019   1556   V: 11907299-11908854 Caenorhabditis elegans
Exon200025   1089   V: 11908906-11909994 Caenorhabditis elegans
Exon200031   159   V: 11910199-11910357 Caenorhabditis elegans
Exon200037   1627   V: 11910406-11912032 Caenorhabditis elegans
Exon200043   1912   V: 11912081-11913992 Caenorhabditis elegans
Exon200049   516   V: 11914065-11914580 Caenorhabditis elegans
Exon200055   147   V: 11914737-11914883 Caenorhabditis elegans
Exon200061   330   V: 11915030-11915359 Caenorhabditis elegans
Exon200064   59   V: 11915717-11915775 Caenorhabditis elegans
Exon200070   217   V: 11915824-11916040 Caenorhabditis elegans
Exon200075   53   V: 11916089-11916141 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R31.1b.1 11901350 11916141 1

1 Sequence

Length
12192

1 Sequence Ontology Term

Identifier Name Description
transcript