WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R31.1a.1 Sequence Name  R31.1a.1
Length (nt)  13098   Chromosome Location  V: 11899449-11916623
Chromosome . Primary Identifier  V Chromosome Location . Start  11899449
Chromosome Location . End  11916623 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R31.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004855 sma-1 R31.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R31.1a R31.1a 12501   V: 11899564-11899630

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R31.1a.1 11899449 11916623 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200016   182   V: 11899449-11899630 Caenorhabditis elegans
Exon200020   263   V: 11901108-11901370 Caenorhabditis elegans
Exon200024   180   V: 11901996-11902175 Caenorhabditis elegans
Exon200028   285   V: 11902785-11903069 Caenorhabditis elegans
Exon200034   384   V: 11903115-11903498 Caenorhabditis elegans
Exon200040   1499   V: 11903545-11905043 Caenorhabditis elegans
Exon200046   2158   V: 11905092-11907249 Caenorhabditis elegans
Exon200052   1556   V: 11907299-11908854 Caenorhabditis elegans
Exon200058   1089   V: 11908906-11909994 Caenorhabditis elegans
Exon200064   159   V: 11910199-11910357 Caenorhabditis elegans
Exon200070   1627   V: 11910406-11912032 Caenorhabditis elegans
Exon200076   1912   V: 11912081-11913992 Caenorhabditis elegans
Exon200082   516   V: 11914065-11914580 Caenorhabditis elegans
Exon200088   147   V: 11914737-11914883 Caenorhabditis elegans
Exon200094   330   V: 11915030-11915359 Caenorhabditis elegans
Exon200097   59   V: 11915717-11915775 Caenorhabditis elegans
Exon200103   217   V: 11915824-11916040 Caenorhabditis elegans
Exon200114   535   V: 11916089-11916623 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R31.1a.1 11899449 11916623 1

1 Sequence

Length
13098

1 Sequence Ontology Term

Identifier Name Description
transcript