WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57F5.2a.1 Sequence Name  F57F5.2a.1
Length (nt)  2922   Chromosome Location  V: 11995805-12001797
Chromosome . Primary Identifier  V Chromosome Location . Start  11995805
Chromosome Location . End  12001797 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57F5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001553 gcy-33 F57F5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57F5.2a F57F5.2a 2838   V: 11995868-11995993

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F57F5.2a.1 11995805 12001797 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200234   189   V: 11995805-11995993 Caenorhabditis elegans
Exon200237   90   V: 11996042-11996131 Caenorhabditis elegans
Exon200242   132   V: 11996625-11996756 Caenorhabditis elegans
Exon200246   382   V: 11996805-11997186 Caenorhabditis elegans
Exon200248   120   V: 11997318-11997437 Caenorhabditis elegans
Exon200250   272   V: 11998067-11998338 Caenorhabditis elegans
Exon200252   325   V: 11998386-11998710 Caenorhabditis elegans
Exon200254   454   V: 11999072-11999525 Caenorhabditis elegans
Exon200257   362   V: 11999730-12000091 Caenorhabditis elegans
Exon200259   503   V: 12000147-12000649 Caenorhabditis elegans
Exon200262   93   V: 12001705-12001797 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F57F5.2a.1 11995805 12001797 -1

1 Sequence

Length
2922

1 Sequence Ontology Term

Identifier Name Description
transcript