WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57F5.2c.1 Sequence Name  F57F5.2c.1
Length (nt)  2844   Chromosome Location  V: 11995868-12001776
Chromosome . Primary Identifier  V Chromosome Location . Start  11995868
Chromosome Location . End  12001776 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57F5.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001553 gcy-33 F57F5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57F5.2c F57F5.2c 2844   V: 11995868-11995993

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F57F5.2c.1 11995868 12001776 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200236   126   V: 11995868-11995993 Caenorhabditis elegans
Exon200239   90   V: 11996042-11996131 Caenorhabditis elegans
Exon200244   132   V: 11996625-11996756 Caenorhabditis elegans
Exon200247   382   V: 11996805-11997186 Caenorhabditis elegans
Exon200249   120   V: 11997318-11997437 Caenorhabditis elegans
Exon200251   272   V: 11998067-11998338 Caenorhabditis elegans
Exon200253   325   V: 11998386-11998710 Caenorhabditis elegans
Exon200255   460   V: 11999072-11999531 Caenorhabditis elegans
Exon200258   362   V: 11999730-12000091 Caenorhabditis elegans
Exon200260   503   V: 12000147-12000649 Caenorhabditis elegans
Exon200261   72   V: 12001705-12001776 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F57F5.2c.1 11995868 12001776 -1

1 Sequence

Length
2844

1 Sequence Ontology Term

Identifier Name Description
transcript