WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00200204 Gene Name  F57F5.7
Sequence Name  ? F57F5.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by set-2 and glp-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 150
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00200204

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F57F5.7 F57F5.7 150   V: 12002131-12002280
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
gk963618
gk964502
gk498688
gk893487
gk488302
gk248638
tm12506

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00200204 12002131 12002280 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_12001798..12002130   333 V: 12001798-12002130 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals. DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. WBPaper00060014:set-2(zr2012)_upregulated
  Transcripts that showed significantly decreased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals. Fold change > 2, FDR < 0.01. WBPaper00065993:glp-1(e2141)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00200204 12002131 12002280 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
150

1 Sequence Ontology Term