WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F57F5.5b Sequence Name  F57F5.5b
Length (nt)  1863   Chromosome Location  V: 12015456-12015602
Chromosome . Primary Identifier  V Chromosome Location . Start  12015456
Chromosome Location . End  12015602
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57F5.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE46445 PKC-1, isoform b 70.2 620 Caenorhabditis elegans
 

Other

25 RNAi

WormBase ID
WBRNAi00107738
WBRNAi00107737
WBRNAi00107736
WBRNAi00048887
WBRNAi00015900
WBRNAi00076500
WBRNAi00027586
WBRNAi00060223
WBRNAi00060225
WBRNAi00060226
WBRNAi00060227
WBRNAi00060228
WBRNAi00060222
WBRNAi00060224
WBRNAi00060229
WBRNAi00060230
WBRNAi00083405
WBRNAi00083428
WBRNAi00083434
WBRNAi00092932
WBRNAi00092538
WBRNAi00083388
WBRNAi00083437
WBRNAi00083441
WBRNAi00106260

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F57F5.5b 12015456 12015602 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004032 pkc-1 F57F5.5 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:F57F5.5b 12015456 12015602 -1
CDS:F57F5.5b 12016147 12016293 -1
CDS:F57F5.5b 12016338 12016665 -1
CDS:F57F5.5b 12016865 12017019 -1
CDS:F57F5.5b 12017067 12017374 -1
CDS:F57F5.5b 12017733 12017793 -1
CDS:F57F5.5b 12018283 12018394 -1
CDS:F57F5.5b 12018498 12018756 -1
CDS:F57F5.5b 12019234 12019437 -1
CDS:F57F5.5b 12019497 12019638 -1

1 Sequence

Length
1863

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F57F5.5b.1 F57F5.5b.1 3006   V: 12014385-12019710