WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B7.1.1 Sequence Name  R07B7.1.1
Length (nt)  2660   Chromosome Location  V: 12060234-12063368
Chromosome . Primary Identifier  V Chromosome Location . Start  12060234
Chromosome Location . End  12063368 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B7.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000533 clh-6 R07B7.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B7.1 R07B7.1 2391   V: 12060503-12060601

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B7.1.1 12060234 12063368 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200494   368   V: 12060234-12060601 Caenorhabditis elegans
Exon200495   184   V: 12060649-12060832 Caenorhabditis elegans
Exon200496   273   V: 12060940-12061212 Caenorhabditis elegans
Exon200497   436   V: 12061261-12061696 Caenorhabditis elegans
Exon200498   790   V: 12061742-12062531 Caenorhabditis elegans
Exon200499   194   V: 12062578-12062771 Caenorhabditis elegans
Exon200500   139   V: 12062818-12062956 Caenorhabditis elegans
Exon200501   147   V: 12062999-12063145 Caenorhabditis elegans
Exon200502   91   V: 12063193-12063283 Caenorhabditis elegans
Exon200503   38   V: 12063331-12063368 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B7.1.1 12060234 12063368 -1

1 Sequence

Length
2660

1 Sequence Ontology Term

Identifier Name Description
transcript