WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27A7.3c.1 Sequence Name  C27A7.3c.1
Length (nt)  2260   Chromosome Location  V: 12140925-12144293
Chromosome . Primary Identifier  V Chromosome Location . Start  12140925
Chromosome Location . End  12144293 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A7.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007755 C27A7.3 C27A7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27A7.3c C27A7.3c 2178   V: 12140952-12141019

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C27A7.3c.1 12140925 12144293 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200866   95   V: 12140925-12141019 Caenorhabditis elegans
Exon200870   79   V: 12141424-12141502 Caenorhabditis elegans
Exon200874   277   V: 12141583-12141859 Caenorhabditis elegans
Exon200878   89   V: 12141901-12141989 Caenorhabditis elegans
Exon200882   144   V: 12142037-12142180 Caenorhabditis elegans
Exon200886   96   V: 12142223-12142318 Caenorhabditis elegans
Exon200890   214   V: 12142359-12142572 Caenorhabditis elegans
Exon200894   157   V: 12142620-12142776 Caenorhabditis elegans
Exon200898   249   V: 12142826-12143074 Caenorhabditis elegans
Exon200902   64   V: 12143138-12143201 Caenorhabditis elegans
Exon200906   121   V: 12143247-12143367 Caenorhabditis elegans
Exon200910   153   V: 12143419-12143571 Caenorhabditis elegans
Exon200912   54   V: 12143621-12143674 Caenorhabditis elegans
Exon200916   124   V: 12143729-12143852 Caenorhabditis elegans
Exon200920   148   V: 12143897-12144044 Caenorhabditis elegans
Exon200925   196   V: 12144098-12144293 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C27A7.3c.1 12140925 12144293 1

1 Sequence

Length
2260

1 Sequence Ontology Term

Identifier Name Description
transcript