WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27A7.5c.1 Sequence Name  C27A7.5c.1
Length (nt)  2318   Chromosome Location  V: 12154877-12162317
Chromosome . Primary Identifier  V Chromosome Location . Start  12154877
Chromosome Location . End  12162317 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A7.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007756 C27A7.5 C27A7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27A7.5c C27A7.5c 2148   V: 12155027-12155215

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27A7.5c.1 12154877 12162317 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200978   339   V: 12154877-12155215 Caenorhabditis elegans
Exon200980   116   V: 12155264-12155379 Caenorhabditis elegans
Exon200984   113   V: 12155488-12155600 Caenorhabditis elegans
Exon200988   256   V: 12155648-12155903 Caenorhabditis elegans
Exon200992   70   V: 12155962-12156031 Caenorhabditis elegans
Exon200996   198   V: 12156284-12156481 Caenorhabditis elegans
Exon201000   215   V: 12156531-12156745 Caenorhabditis elegans
Exon201004   415   V: 12156796-12157210 Caenorhabditis elegans
Exon201008   155   V: 12157259-12157413 Caenorhabditis elegans
Exon201012   127   V: 12158049-12158175 Caenorhabditis elegans
Exon201020   146   V: 12160298-12160443 Caenorhabditis elegans
Exon201023   93   V: 12160859-12160951 Caenorhabditis elegans
Exon201026   75   V: 12162243-12162317 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27A7.5c.1 12154877 12162317 -1

1 Sequence

Length
2318

1 Sequence Ontology Term

Identifier Name Description
transcript