WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27A7.5e.1 Sequence Name  C27A7.5e.1
Length (nt)  2294   Chromosome Location  V: 12154867-12160998
Chromosome . Primary Identifier  V Chromosome Location . Start  12154867
Chromosome Location . End  12160998 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A7.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007756 C27A7.5 C27A7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27A7.5e C27A7.5e 2055   V: 12155027-12155215

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27A7.5e.1 12154867 12160998 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon201009   349   V: 12154867-12155215 Caenorhabditis elegans
Exon201016   116   V: 12155264-12155379 Caenorhabditis elegans
Exon201020   113   V: 12155488-12155600 Caenorhabditis elegans
Exon201024   256   V: 12155648-12155903 Caenorhabditis elegans
Exon201028   70   V: 12155962-12156031 Caenorhabditis elegans
Exon201032   198   V: 12156284-12156481 Caenorhabditis elegans
Exon201036   215   V: 12156531-12156745 Caenorhabditis elegans
Exon201040   415   V: 12156796-12157210 Caenorhabditis elegans
Exon201044   155   V: 12157259-12157413 Caenorhabditis elegans
Exon201048   127   V: 12158049-12158175 Caenorhabditis elegans
Exon201052   140   V: 12160298-12160437 Caenorhabditis elegans
Exon201058   140   V: 12160859-12160998 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27A7.5e.1 12154867 12160998 -1

1 Sequence

Length
2294

1 Sequence Ontology Term

Identifier Name Description
transcript