WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:K12F2.2a Sequence Name  K12F2.2a
Length (nt)  3201   Chromosome Location  V: 12213336-12213398
Chromosome . Primary Identifier  V Chromosome Location . Start  12213336
Chromosome Location . End  12213398
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K12F2.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE31041 VAB-8, isoform a 118.2 1066 Caenorhabditis elegans
 

Other

11 RNAi

WormBase ID
WBRNAi00034315
WBRNAi00089770
WBRNAi00002357
WBRNAi00050671
WBRNAi00050672
WBRNAi00017059
WBRNAi00022190
WBRNAi00086117
WBRNAi00090034
WBRNAi00090193
WBRNAi00090352

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:K12F2.2a 12213336 12213398 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006874 vab-8 K12F2.2 Caenorhabditis elegans

15 Locations


Feature . Primary Identifier
Start End Strand
CDS:K12F2.2a 12213336 12213398 1
CDS:K12F2.2a 12213484 12213715 1
CDS:K12F2.2a 12213859 12213952 1
CDS:K12F2.2a 12213998 12214230 1
CDS:K12F2.2a 12214274 12214487 1
CDS:K12F2.2a 12215715 12215889 1
CDS:K12F2.2a 12216537 12216723 1
CDS:K12F2.2a 12219938 12220035 1
CDS:K12F2.2a 12222141 12222317 1
CDS:K12F2.2a 12222615 12222679 1
CDS:K12F2.2a 12223739 12224024 1
CDS:K12F2.2a 12224116 12224459 1
CDS:K12F2.2a 12224555 12225285 1
CDS:K12F2.2a 12225340 12225496 1
CDS:K12F2.2a 12225597 12225741 1

1 Sequence

Length
3201

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K12F2.2a.1 K12F2.2a.1 3403   V: 12213327-12225934