WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K12F2.2a.1 Sequence Name  K12F2.2a.1
Length (nt)  3403   Chromosome Location  V: 12213327-12225934
Chromosome . Primary Identifier  V Chromosome Location . Start  12213327
Chromosome Location . End  12225934 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K12F2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006874 vab-8 K12F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K12F2.2a K12F2.2a 3201   V: 12213336-12213398

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K12F2.2a.1 12213327 12225934 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon201175   72   V: 12213327-12213398 Caenorhabditis elegans
Exon201176   232   V: 12213484-12213715 Caenorhabditis elegans
Exon201177   94   V: 12213859-12213952 Caenorhabditis elegans
Exon201178   233   V: 12213998-12214230 Caenorhabditis elegans
Exon201179   214   V: 12214274-12214487 Caenorhabditis elegans
Exon201182   175   V: 12215715-12215889 Caenorhabditis elegans
Exon201183   187   V: 12216537-12216723 Caenorhabditis elegans
Exon201184   98   V: 12219938-12220035 Caenorhabditis elegans
Exon201188   177   V: 12222141-12222317 Caenorhabditis elegans
Exon201190   65   V: 12222615-12222679 Caenorhabditis elegans
Exon201193   286   V: 12223739-12224024 Caenorhabditis elegans
Exon201196   344   V: 12224116-12224459 Caenorhabditis elegans
Exon201199   731   V: 12224555-12225285 Caenorhabditis elegans
Exon201202   157   V: 12225340-12225496 Caenorhabditis elegans
Exon201206   338   V: 12225597-12225934 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K12F2.2a.1 12213327 12225934 1

1 Sequence

Length
3403

1 Sequence Ontology Term

Identifier Name Description
transcript