WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04H1.4a.1 Sequence Name  T04H1.4a.1
Length (nt)  4084   Chromosome Location  V: 12246616-12251246
Chromosome . Primary Identifier  V Chromosome Location . Start  12246616
Chromosome Location . End  12251246 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04H1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004296 rad-50 T04H1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04H1.4a T04H1.4a 3897   V: 12246616-12246633

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T04H1.4a.1 12246616 12251246 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon201186   18   V: 12246616-12246633 Caenorhabditis elegans
Exon201187   111   V: 12246689-12246799 Caenorhabditis elegans
Exon201189   81   V: 12246847-12246927 Caenorhabditis elegans
Exon201191   102   V: 12246971-12247072 Caenorhabditis elegans
Exon201193   282   V: 12247127-12247408 Caenorhabditis elegans
Exon201195   220   V: 12247455-12247674 Caenorhabditis elegans
Exon201197   251   V: 12247722-12247972 Caenorhabditis elegans
Exon201199   1131   V: 12248022-12249152 Caenorhabditis elegans
Exon201201   680   V: 12249210-12249889 Caenorhabditis elegans
Exon201203   543   V: 12249941-12250483 Caenorhabditis elegans
Exon201205   313   V: 12250539-12250851 Caenorhabditis elegans
Exon201208   352   V: 12250895-12251246 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T04H1.4a.1 12246616 12251246 1

1 Sequence

Length
4084

1 Sequence Ontology Term

Identifier Name Description
transcript