WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55C5.7a.1 Sequence Name  F55C5.7a.1
Length (nt)  2718   Chromosome Location  V: 12284060-12288615
Chromosome . Primary Identifier  V Chromosome Location . Start  12284060
Chromosome Location . End  12288615 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55C5.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010096 rskd-1 F55C5.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55C5.7a F55C5.7a 2547   V: 12284218-12284479

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55C5.7a.1 12284060 12288615 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon201285   420   V: 12284060-12284479 Caenorhabditis elegans
Exon201286   767   V: 12284523-12285289 Caenorhabditis elegans
Exon201287   654   V: 12285341-12285994 Caenorhabditis elegans
Exon201288   134   V: 12286857-12286990 Caenorhabditis elegans
Exon201289   133   V: 12287035-12287167 Caenorhabditis elegans
Exon201291   52   V: 12287370-12287421 Caenorhabditis elegans
Exon201292   101   V: 12287468-12287568 Caenorhabditis elegans
Exon201294   110   V: 12287985-12288094 Caenorhabditis elegans
Exon201296   265   V: 12288199-12288463 Caenorhabditis elegans
Exon201298   82   V: 12288534-12288615 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55C5.7a.1 12284060 12288615 -1

1 Sequence

Length
2718

1 Sequence Ontology Term

Identifier Name Description
transcript