WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28C1.2c.1 Sequence Name  F28C1.2c.1
Length (nt)  3181   Chromosome Location  V: 12453290-12463008
Chromosome . Primary Identifier  V Chromosome Location . Start  12453290
Chromosome Location . End  12463008 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28C1.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001179 egl-10 F28C1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28C1.2c F28C1.2c 1758   V: 12454521-12454649

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28C1.2c.1 12453290 12463008 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon201737   1360   V: 12453290-12454649 Caenorhabditis elegans
Exon201741   93   V: 12456498-12456590 Caenorhabditis elegans
Exon201744   319   V: 12456942-12457260 Caenorhabditis elegans
Exon201747   135   V: 12457315-12457449 Caenorhabditis elegans
Exon201750   153   V: 12457495-12457647 Caenorhabditis elegans
Exon201753   402   V: 12457702-12458103 Caenorhabditis elegans
Exon201757   142   V: 12459370-12459511 Caenorhabditis elegans
Exon201760   159   V: 12459773-12459931 Caenorhabditis elegans
Exon201763   206   V: 12459982-12460187 Caenorhabditis elegans
Exon201766   212   V: 12462797-12463008 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28C1.2c.1 12453290 12463008 -1

1 Sequence

Length
3181

1 Sequence Ontology Term

Identifier Name Description
transcript