WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199955 Gene Name  F45D3.10
Sequence Name  ? F45D3.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by pmt-2; crh-1; and ilc-17.1 based on microarray and RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 117
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199955

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F45D3.10 F45D3.10 117   V: 12548978-12549094
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
gk963618
WBVar00009515
gk411381
gk410662

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199955 12548978 12549094 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_12549095..12549210   116 V: 12549095-12549210 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that showed significantly decreased expression in pmt-2(RNAi) animals comparing to control animals iinjected with empty vector. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:pmt-2(RNAi)_downregulated
  Transcripts significantly downregulated in crh-1(n3315) vs N2 hypodermal tissue. DESeq2, FDR < 0.05. WBPaper00059816:crh-1(n3315)_downrgulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199955 12548978 12549094 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
117

1 Sequence Ontology Term