WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:ZC116.3 Sequence Name  ZC116.3
Length (nt)  12144   Chromosome Location  V: 12611347-12611456
Chromosome . Primary Identifier  V Chromosome Location . Start  12611347
Chromosome Location . End  12611456
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC116.3

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42882 CUBN-1 453.3 4047 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00058718
WBRNAi00058720

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:ZC116.3 12611347 12611456 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013855 cubn-1 ZC116.3 Caenorhabditis elegans

42 Locations


Feature . Primary Identifier
Start End Strand
CDS:ZC116.3 12611347 12611456 1
CDS:ZC116.3 12611507 12611636 1
CDS:ZC116.3 12612508 12612639 1
CDS:ZC116.3 12612683 12612792 1
CDS:ZC116.3 12612847 12613379 1
CDS:ZC116.3 12613759 12614105 1
CDS:ZC116.3 12614157 12614343 1
CDS:ZC116.3 12614728 12615108 1
CDS:ZC116.3 12615156 12615749 1
CDS:ZC116.3 12615796 12616071 1
CDS:ZC116.3 12616120 12616328 1
CDS:ZC116.3 12616378 12617275 1
CDS:ZC116.3 12617607 12617809 1
CDS:ZC116.3 12617853 12618725 1
CDS:ZC116.3 12618774 12618879 1
CDS:ZC116.3 12619149 12619407 1
CDS:ZC116.3 12619461 12620099 1
CDS:ZC116.3 12620148 12620562 1
CDS:ZC116.3 12620618 12620822 1
CDS:ZC116.3 12620886 12621117 1
CDS:ZC116.3 12621160 12621320 1
CDS:ZC116.3 12621424 12622185 1
CDS:ZC116.3 12622263 12622588 1
CDS:ZC116.3 12622793 12622862 1
CDS:ZC116.3 12622911 12623125 1
CDS:ZC116.3 12623177 12623486 1
CDS:ZC116.3 12623532 12623669 1
CDS:ZC116.3 12623838 12624130 1
CDS:ZC116.3 12624586 12625020 1
CDS:ZC116.3 12625242 12625614 1

1 Sequence

Length
12144

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:ZC116.3.1 ZC116.3.1 12216   V: 12611329-12628749