WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC116.3.1 Sequence Name  ZC116.3.1
Length (nt)  12216   Chromosome Location  V: 12611329-12628749
Chromosome . Primary Identifier  V Chromosome Location . Start  12611329
Chromosome Location . End  12628749 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC116.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013855 cubn-1 ZC116.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC116.3 ZC116.3 12144   V: 12611347-12611456

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZC116.3.1 12611329 12628749 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

42 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon202220   128   V: 12611329-12611456 Caenorhabditis elegans
Exon202221   130   V: 12611507-12611636 Caenorhabditis elegans
Exon202225   132   V: 12612508-12612639 Caenorhabditis elegans
Exon202226   110   V: 12612683-12612792 Caenorhabditis elegans
Exon202227   533   V: 12612847-12613379 Caenorhabditis elegans
Exon202228   347   V: 12613759-12614105 Caenorhabditis elegans
Exon202229   187   V: 12614157-12614343 Caenorhabditis elegans
Exon202230   381   V: 12614728-12615108 Caenorhabditis elegans
Exon202231   594   V: 12615156-12615749 Caenorhabditis elegans
Exon202232   276   V: 12615796-12616071 Caenorhabditis elegans
Exon202233   209   V: 12616120-12616328 Caenorhabditis elegans
Exon202234   898   V: 12616378-12617275 Caenorhabditis elegans
Exon202235   203   V: 12617607-12617809 Caenorhabditis elegans
Exon202236   873   V: 12617853-12618725 Caenorhabditis elegans
Exon202237   106   V: 12618774-12618879 Caenorhabditis elegans
Exon202238   259   V: 12619149-12619407 Caenorhabditis elegans
Exon202239   639   V: 12619461-12620099 Caenorhabditis elegans
Exon202240   415   V: 12620148-12620562 Caenorhabditis elegans
Exon202241   205   V: 12620618-12620822 Caenorhabditis elegans
Exon202242   232   V: 12620886-12621117 Caenorhabditis elegans
Exon202243   161   V: 12621160-12621320 Caenorhabditis elegans
Exon202244   762   V: 12621424-12622185 Caenorhabditis elegans
Exon202245   326   V: 12622263-12622588 Caenorhabditis elegans
Exon202246   70   V: 12622793-12622862 Caenorhabditis elegans
Exon202247   215   V: 12622911-12623125 Caenorhabditis elegans
Exon202248   310   V: 12623177-12623486 Caenorhabditis elegans
Exon202249   138   V: 12623532-12623669 Caenorhabditis elegans
Exon202250   293   V: 12623838-12624130 Caenorhabditis elegans
Exon202253   435   V: 12624586-12625020 Caenorhabditis elegans
Exon202254   373   V: 12625242-12625614 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZC116.3.1 12611329 12628749 1

1 Sequence

Length
12216

1 Sequence Ontology Term

Identifier Name Description
transcript