WormMine: Gene WBGene00050977

• WormBase Gene ID: WBGene00050977
• Gene Name: F56H9.7
• Sequence Name: F56H9.7
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in head mesodermal cell based on RNA-seq studies. Is affected by hmg-3; hda-2; and etr-1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 1149

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00050977

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

25 Allele

• gk963271
• gk963301
• gk964458
• gk964459
• gk963618
• WBVar02068819
• WBVar01868192
• WBVar01868193
• WBVar01975105
• WBVar01975104
• WBVar01590334
• WBVar01590335
• h12213
• gk678074
• gk835959
• gk519709
• gk491126
• gk702073
• gk702074
• gk922605
• WBVar00009980
• gk250006
• WBVar00590153
• WBVar00590154
• WBVar01808851

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00050977
• Start: 12632490
• End: 12633638
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_12632149..12632489
• Length (nt): 341
• Chromosome Location: V: 12632149-12632489
• Organism: Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in BAT525 [hmg-3 (tm2539) / dpy-5(e61) unc-13(e1091) I.] comparing to in N2 at 1-day post L4 adult hermaphrodite stage.	DESeq 2, fold change > 4, adjusted p-value < 0.05.	WBPaper00055013:hmg-3(bar24)_upregulated
	Transcripts that showed significantly increased expression in hda-2(ok1479) comparing to in N2 animals.	DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2.	WBPaper00062159:hda-2(ok1479)_upregulated
	Transcripts that showed significantly lower expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).	DESeq2, fold change >= 2, FDR <= 0.01.	WBPaper00056826:hmc_biased
	Transcripts that showed significantly increased expression in natural variant RC301(that showed resistance towards bacteria infection) vs. natural variant DA650, after 4 hour of infection by P. aeruginosa PA14.	Fold change > 2, p-value < 0.05.	WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
	Genome-wide analysis of developmental and sex-regulated gene expression profile.	self-organizing map	cgc4489_group_2
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00050977
• Start: 12632490
• End: 12633638
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1149

1 Sequence Ontology Term