WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F3.1b.1 Sequence Name  F54F3.1b.1
Length (nt)  4830   Chromosome Location  V: 12910107-12917196
Chromosome . Primary Identifier  V Chromosome Location . Start  12910107
Chromosome Location . End  12917196 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F3.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003738 nid-1 F54F3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F3.1b F54F3.1b 4584   V: 12910118-12910222

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F3.1b.1 12910107 12917196 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon203012   116   V: 12910107-12910222 Caenorhabditis elegans
Exon203016   366   V: 12910652-12911017 Caenorhabditis elegans
Exon203019   167   V: 12911073-12911239 Caenorhabditis elegans
Exon203022   131   V: 12911287-12911417 Caenorhabditis elegans
Exon203025   300   V: 12911463-12911762 Caenorhabditis elegans
Exon203028   251   V: 12911854-12912104 Caenorhabditis elegans
Exon203031   313   V: 12912217-12912529 Caenorhabditis elegans
Exon203034   929   V: 12912839-12913767 Caenorhabditis elegans
Exon203037   124   V: 12913823-12913946 Caenorhabditis elegans
Exon203040   144   V: 12913992-12914135 Caenorhabditis elegans
Exon203044   97   V: 12914441-12914537 Caenorhabditis elegans
Exon203046   497   V: 12914770-12915266 Caenorhabditis elegans
Exon203048   243   V: 12915313-12915555 Caenorhabditis elegans
Exon203050   691   V: 12915816-12916506 Caenorhabditis elegans
Exon203052   461   V: 12916736-12917196 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F3.1b.1 12910107 12917196 1

1 Sequence

Length
4830

1 Sequence Ontology Term

Identifier Name Description
transcript