WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F3.1c.1 Sequence Name  F54F3.1c.1
Length (nt)  4018   Chromosome Location  V: 12910107-12917221
Chromosome . Primary Identifier  V Chromosome Location . Start  12910107
Chromosome Location . End  12917221 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F3.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003738 nid-1 F54F3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F3.1c F54F3.1c 3747   V: 12910118-12910222

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F3.1c.1 12910107 12917221 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon203013   116   V: 12910107-12910222 Caenorhabditis elegans
Exon203017   366   V: 12910652-12911017 Caenorhabditis elegans
Exon203020   167   V: 12911073-12911239 Caenorhabditis elegans
Exon203023   131   V: 12911287-12911417 Caenorhabditis elegans
Exon203026   300   V: 12911463-12911762 Caenorhabditis elegans
Exon203029   251   V: 12911854-12912104 Caenorhabditis elegans
Exon203032   313   V: 12912217-12912529 Caenorhabditis elegans
Exon203035   929   V: 12912839-12913767 Caenorhabditis elegans
Exon203038   124   V: 12913823-12913946 Caenorhabditis elegans
Exon203041   144   V: 12913992-12914135 Caenorhabditis elegans
Exon203051   691   V: 12915816-12916506 Caenorhabditis elegans
Exon203054   486   V: 12916736-12917221 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F3.1c.1 12910107 12917221 1

1 Sequence

Length
4018

1 Sequence Ontology Term

Identifier Name Description
transcript