WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F3.1a.1 Sequence Name  F54F3.1a.1
Length (nt)  4997   Chromosome Location  V: 12910113-12917198
Chromosome . Primary Identifier  V Chromosome Location . Start  12910113
Chromosome Location . End  12917198 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003738 nid-1 F54F3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F3.1a F54F3.1a 4755   V: 12910118-12910222

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54F3.1a.1 12910113 12917198 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon203014   110   V: 12910113-12910222 Caenorhabditis elegans
Exon203015   366   V: 12910652-12911017 Caenorhabditis elegans
Exon203018   167   V: 12911073-12911239 Caenorhabditis elegans
Exon203021   131   V: 12911287-12911417 Caenorhabditis elegans
Exon203024   300   V: 12911463-12911762 Caenorhabditis elegans
Exon203027   251   V: 12911854-12912104 Caenorhabditis elegans
Exon203030   313   V: 12912217-12912529 Caenorhabditis elegans
Exon203033   929   V: 12912839-12913767 Caenorhabditis elegans
Exon203036   124   V: 12913823-12913946 Caenorhabditis elegans
Exon203039   144   V: 12913992-12914135 Caenorhabditis elegans
Exon203042   171   V: 12914221-12914391 Caenorhabditis elegans
Exon203043   97   V: 12914441-12914537 Caenorhabditis elegans
Exon203045   497   V: 12914770-12915266 Caenorhabditis elegans
Exon203047   243   V: 12915313-12915555 Caenorhabditis elegans
Exon203049   691   V: 12915816-12916506 Caenorhabditis elegans
Exon203053   463   V: 12916736-12917198 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54F3.1a.1 12910113 12917198 1

1 Sequence

Length
4997

1 Sequence Ontology Term

Identifier Name Description
transcript