WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T16G1.9.1 Sequence Name  T16G1.9.1
Length (nt)  3275   Chromosome Location  V: 12946798-12950862
Chromosome . Primary Identifier  V Chromosome Location . Start  12946798
Chromosome Location . End  12950862 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T16G1.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011802 T16G1.9 T16G1.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T16G1.9 T16G1.9 2838   V: 12947095-12947242

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T16G1.9.1 12946798 12950862 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon203192   445   V: 12946798-12947242 Caenorhabditis elegans
Exon203194   519   V: 12947299-12947817 Caenorhabditis elegans
Exon203196   439   V: 12947865-12948303 Caenorhabditis elegans
Exon203198   148   V: 12948349-12948496 Caenorhabditis elegans
Exon203200   150   V: 12948548-12948697 Caenorhabditis elegans
Exon203202   431   V: 12948746-12949176 Caenorhabditis elegans
Exon203204   680   V: 12949228-12949907 Caenorhabditis elegans
Exon203208   151   V: 12950245-12950395 Caenorhabditis elegans
Exon203210   81   V: 12950440-12950520 Caenorhabditis elegans
Exon203212   95   V: 12950566-12950660 Caenorhabditis elegans
Exon203214   136   V: 12950727-12950862 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T16G1.9.1 12946798 12950862 -1

1 Sequence

Length
3275

1 Sequence Ontology Term

Identifier Name Description
transcript