WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T16G1.9.2 Sequence Name  T16G1.9.2
Length (nt)  3221   Chromosome Location  V: 12946798-12950742
Chromosome . Primary Identifier  V Chromosome Location . Start  12946798
Chromosome Location . End  12950742 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T16G1.9.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011802 T16G1.9 T16G1.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T16G1.9 T16G1.9 2838   V: 12947095-12947242

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T16G1.9.2 12946798 12950742 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon203193   445   V: 12946798-12947242 Caenorhabditis elegans
Exon203195   519   V: 12947299-12947817 Caenorhabditis elegans
Exon203197   439   V: 12947865-12948303 Caenorhabditis elegans
Exon203199   148   V: 12948349-12948496 Caenorhabditis elegans
Exon203201   150   V: 12948548-12948697 Caenorhabditis elegans
Exon203203   431   V: 12948746-12949176 Caenorhabditis elegans
Exon203205   680   V: 12949228-12949907 Caenorhabditis elegans
Exon203209   151   V: 12950245-12950395 Caenorhabditis elegans
Exon203211   81   V: 12950440-12950520 Caenorhabditis elegans
Exon203213   177   V: 12950566-12950742 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T16G1.9.2 12946798 12950742 -1

1 Sequence

Length
3221

1 Sequence Ontology Term

Identifier Name Description
transcript