WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R186.5a.1 Sequence Name  R186.5a.1
Length (nt)  1679   Chromosome Location  V: 12973261-12987161
Chromosome . Primary Identifier  V Chromosome Location . Start  12973261
Chromosome Location . End  12987161 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R186.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004793 shw-3 R186.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R186.5a R186.5a 1440   V: 12973412-12973519

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R186.5a.1 12973261 12987161 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon203216   259   V: 12973261-12973519 Caenorhabditis elegans
Exon203219   105   V: 12973568-12973672 Caenorhabditis elegans
Exon203224   117   V: 12973731-12973847 Caenorhabditis elegans
Exon203230   405   V: 12974496-12974900 Caenorhabditis elegans
Exon203235   321   V: 12974950-12975270 Caenorhabditis elegans
Exon203241   129   V: 12975804-12975932 Caenorhabditis elegans
Exon203246   61   V: 12975979-12976039 Caenorhabditis elegans
Exon203251   105   V: 12976086-12976190 Caenorhabditis elegans
Exon203256   99   V: 12976243-12976341 Caenorhabditis elegans
Exon203266   78   V: 12987084-12987161 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R186.5a.1 12973261 12987161 -1

1 Sequence

Length
1679

1 Sequence Ontology Term

Identifier Name Description
transcript