WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R186.5b.1 Sequence Name  R186.5b.1
Length (nt)  1503   Chromosome Location  V: 12973412-12980609
Chromosome . Primary Identifier  V Chromosome Location . Start  12973412
Chromosome Location . End  12980609 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R186.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004793 shw-3 R186.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R186.5b R186.5b 1503   V: 12973412-12973519

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R186.5b.1 12973412 12980609 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon203217   108   V: 12973412-12973519 Caenorhabditis elegans
Exon203222   105   V: 12973568-12973672 Caenorhabditis elegans
Exon203227   117   V: 12973731-12973847 Caenorhabditis elegans
Exon203233   405   V: 12974496-12974900 Caenorhabditis elegans
Exon203238   321   V: 12974950-12975270 Caenorhabditis elegans
Exon203244   129   V: 12975804-12975932 Caenorhabditis elegans
Exon203249   61   V: 12975979-12976039 Caenorhabditis elegans
Exon203254   105   V: 12976086-12976190 Caenorhabditis elegans
Exon203258   99   V: 12976243-12976341 Caenorhabditis elegans
Exon203261   53   V: 12980557-12980609 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R186.5b.1 12973412 12980609 -1

1 Sequence

Length
1503

1 Sequence Ontology Term

Identifier Name Description
transcript